Kyungrak Choi, Yoonsuck Choe, and Hangue Park. Reinforcement learning may demystify the limited human motor learning efficacy due to visual-proprioceptive mismatch. International Journal of Neural Systems, 2024.
Qinbo Li and Yoonsuck Choe. Emergence of tool construction and tool use through hierarchical reinforcement learning. In Carlo F. Morabito, Cesare Alippi, Yoonsuck Choe, and Robert Kozma, editors, Artificial Intelligence in the Age of Neural Networks and Brain Computing, page In press. Academic Press, Cambridge, MA, second edition, 2024.
Francesco Carlo Morabito, Robert Kozma, Cesare Alippi, and Yoonsuck Choe. Advances in ai, neural networks, and brain computing: An introduction. In Artificial Intelligence in the Age of Neural Networks and Brain Computing, pages 1-8. Academic Press, Cambridge, MA, second edition, 2024.
Hari Raghav, Shuo-Hsiu James Chang, Yoonsuck Choe, and Hangue Park. Proportional sway-based electrotactile feedback improves lateral standing balance. Frontiers in Neuroscience, 18:1249783, 2024.
Qing Wan, Siu Wun Cheung, and Yoonsuck Choe. AdjointBackMapV2: Precise reconstruction of arbitrary CNN unit's activation via adjoint operators. Neural Networks, 2024.
2023
Jin Huang and Yoonsuck Choe. Evolution of proxy use in neural network controllers for crowd modeling. In Proceedings of the International Joint Conference on Neural Networks, 2023.
Jung H. Lee, Yoonsuck Choe, Salva Ardid, Reza Abbasi-Asl, Michelle McCarthy, and Brian Hu. Editorial: Functional microcircuits in the brain and in artificial intelligent systems. Frontiers in Computational Neuroscience, 2023.
Ajit Jain, Andruid Kerne, Nic Lupfer, Gabriel Britain, Aaron Perrine, Yoonsuck Choe, John Keyser, and Ruihong Huang. Recognizing creative visual design: multiscale design characteristics in free-form web curation documents. In Proceedings of the 21st ACM Symposium on Document Engineering, pages 1-10, 2021.
Woo Seok Kim, Jianfeng Liu, Qinbo Li, Sungcheol Hong, Kezhuo Qi, Rahul Cherukuri, Byung-Jun Yoon, Justin Moscarello, Yoonsuck Choe, Stephen Maren, et al. Ai-driven high-throughput automation of behavioral analysis and dual-channel wireless optogenetics for multiplexing brain dynamics. bioRxiv, pages 2021-09, 2021.
Qinbo Li and Yoonsuck Choe. Construction and use of tools through hierarchical deep reinforcement learning. In 2021 IEEE/RSJ IROS Workshop on Human-like Behavior and Cognition in Robots, page TBA, 2021.
Qinbo Li, Qing Wan, Sang-Heon Lee, and Yoonsuck Choe. Video face recognition with audio-visual aggregation network. In International Conference on Neural Information Processing (ICONIP 2021), pages 150-161. Springer, 2021.
Khuong Nguyen and Yoonsuck Choe. Emergence of different modes of tool use in a reaching and dragging task. In 2021 International Joint Conference on Neural Networks (IJCNN), 2021. In press.
Maryam Savari and Yoonsuck Choe. Online virtual training in soft actor-critic for autonomous driving. In 2021 International Joint Conference on Neural Networks (IJCNN), 2021. In press.
Michael R Nowak, Junseok Lee, and Yoonsuck Choe. A queryable graph representation of vascular connectivity in the whole mouse brain. In 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pages 256-260. IEEE, 2019.
Ye Wang, Han Wang, Xinxiang Zhang, Theodora Chaspari, Yoonsuck Choe, and Mi Lu. An attention-aware bidirectional multi-residual recurrent neural network (abmrnn): A study about better short-term text classification. In ICASSP 2019-2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pages 3582-3586. IEEE, 2019.
Ye Wang, Xinxiang Zhang, Mi Lu, Han Wang, and Yoonsuck Choe. Attention augmentation with multi-residual in bidirectional LSTM. Neurocomputing, 385:340-347, 2019.
2018
Junseok Lee, Jaewook Yoo, and Yoonsuck Choe. Tracing and analysis of the whole mouse brain vasculature with systematic cleaning to remove and consolidate erroneous images. In Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 143-146, 2018.
Michael Nowak and Yoonsuck Choe. Data-driven synthetic cerebrovascular models for validation of segmentation algorithms. In Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 5154-5157, 2018.
Michael Nowak and Yoonsuck Choe. Towards an open-source framework for the analysis of cerebrovasculature structure. In Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 570-573, 2018.
2017
Junseok Lee, Wookyung An, and Yoonsuck Choe. Mapping the full vascular network in the mouse brain at submicrometer resolution. In Engineering in Medicine and Biology Society (EMBC), 2017 39th Annual International Conference of the IEEE, pages 3309-3312. IEEE, 2017.
Chul Sung, Chunhui Higgins, Bo Zhang, and Yoonsuck Choe. Evaluating deep learning in churn prediction for everything-as-a-service in the cloud. In Proceedings of the International Joint Conference on Neural Networks, pages 3664-3669, 2017.
Sungjun Lim, Michael Nowak, and Yoonsuck Choe. Automated neurovascular tracing and analysis of the knife-edge scanning microscope rat nissl data set using a computing cluster. In Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 6445-6448, 2016.
Daniel E. Miller, Raj Shah, Wencong Zhang, Jaewook Yoo, Jaerock Kwon, David Mayerich, John Keyser, Louise C. Abbott, and Yoonsuck Choe. Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope. In Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 5901-5904, 2016.
Michael Nowak and Yoonsuck Choe. Learning to distinguish cerebral vasculature data from mechanical chatter in india-ink images acquired using knife-edge scanning microscopy. In Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 3989-3992, 2016.
Michael Nowak, Alexander Lozovskiy, Dimitri Dobroskok, and Yoonsuck Choe. Knife-edge scanning microscopy for in silico study of cerebral blood flow: from biological imaging data to flow simulations. In Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 5957-5960, 2016.
Chul Sung, Bo Zhang, Chunhui Higgins, and Yoonsuck Choe. Data-driven sales leads prediction for everything-as-a-service in the cloud. In Proceedings of the 3rd IEEE International Conference on Data Science and Advanced Analytics, pages 557-563, 2016.
Yoonsuck Choe, Jaerock Kwon, David Mayerich, and Louise C. Abbott. Connectome, mouse. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 807-810. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Anti-Hebbian learning. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 191-193. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Brain atlases. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, page 434. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Computational neuroanatomy: Overview. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 24-26. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Connectome, general. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 798-806. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Hebbian learning. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 1305-1309. Springer, New York, 1st edition, 2015.
Yoonsuck Choe. Physical sectioning microscopy. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 2376-2379. Springer, New York, 1st edition, 2015.
Jisung Kim, Yoonsuck Choe, and Klaus Mueller. Extracting clinical relations in electronic health records using enriched parse trees. Procedia Computer Science, 53:274-283, 2015.
Shashwat Lal Das, John Keyser, and Yoonsuck Choe. Random-forest-based automated cell detection in knife-edge scanning microscope rat nissl data. In Proceedings of the International Joint Conference on Neural Networks, 2015. DOI: 10.1109/IJCNN.2015.7280852.
David Mayerich, Yoonsuck Choe, and John Keyser. Reconstruction, techniques and validation. In Dieter Jaeger and Ranu Jung, editors, Encyclopedia of Computational Neuroscience, pages 2591-2593. Springer, New York, 1st edition, 2015.
Takashi Yamauchi, Hwaryong Seo, Yoonsuck Choe, Casady Bowman, and Kunchen Xiao. Assessing emotions by cursor motions: An affective computing approach. In Proceedings of the 36th Annual Conference of the Cognitive Science Society, pages 2721-2726, 2015.
Wencong Zhang, Jaewook Yoo, John Keyser, Louise C. Abbott, and Yoonsuck Choe. Real-time detection of imaging errors in the knife-edge scanning microscope through change detection. In Proceedings of the 2015 IEEE 12th International Symposium on Biomedical Imaging, pages 177-181, 2015.
Yoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel E. Miller, Ji Ryang Chung, Chul Sung, John Keyser, and Louise C. Abbott. Knife-edge scanning microscopy for connectomics research. In Proceedings of the International Joint Conference on Neural Networks, pages 2258-2265, Piscataway, NJ, 2011. IEEE Press.
Jaerock Kwon, David Mayerich, and Yoonsuck Choe. Automated cropping and artifact removal for knife-edge scanning microscopy. In Proceedings of the IEEE International Symposium on Biomedical Imaging, pages 1366-1369, 2011.
Heeyoul Choi, Seungjin Choi, Anup Katake, and Yoonsuck Choe. Learning alpha-integration with partially labeled data. In Proceedings of the 2010 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2010), pages 2058-2061, 2010.
Heeyoul Choi, Seungjin Choi, Anup Katake, Yoonseop Kang, and Yoonsuck Choe. Manifold alpha-integration. In B.-T. Zhang and M. A. Orgun, editors, Lecture Notes in Computer Science, PRICAI 2010: Trends in Artificial Intelligence. 11th Pacific Rim International Conference on Artificial Intelligence, pages 397-408. Springer, Berlin, 2010.
Heeyoul Choi, Anup Katake, Seungjin Choi, and Yoonsuck Choe. Alpha-integration of multiple evidence. In Proceedings of the 2010 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2010), pages 2210-2213, 2010.
Timothy A. Mann and Yoonsuck Choe. Grounding the meaning of nonprototypical smiles on motor behavior. Behavioral and Brain Sciences, 33:453-454, 2010. Commentary on Niedenthal et al. (same volume).
Y. Choe, L. C. Abbott, D. E. Miller, D. Han, H.-F. Yang, J. R. Chung, C. Sung, D. Mayerich, J. Kwon, K. Micheva, and S. J. Smith. Multiscale imaging, analysis, and integration of mouse brain networks. In Neuroscience Meeting Planner, San Diego, CA: Society for Neuroscience, 2010. Program No. 516.3. Online.
Yoonsuck Choe, Louise C. Abbott, Giovanna Ponte, John Keyser, Jaerock Kwon, David Mayerich, Daniel Miller, Donghyeop Han, Anna Maria Grimaldi, Graziano Fiorito, David B. Edelman, and Jeffrey L. McKinstry. Charting out the octopus connectome at submicron resolution using the knife-edge scanning microscope. BMC Neuroscience, 11(Suppl 1):P136, 2010. Nineteenth Annual Computational Neuroscience Meeting: CNS*2010.
Heeyoul Choi and Yoonsuck Choe. Simultaneous grounding and receptive field learning in visuomotor agents. BMC Neuroscience, 11(Suppl 1):P89, 2010. Nineteenth Annual Computational Neuroscience Meeting: CNS*2010.
Huei-Fang Yang and Yoonsuck Choe. Reconstruction of neuronal morphologies from electron microscopy images using graph cuts. BMC Neuroscience, 11(Suppl 1):P142, 2010. Nineteenth Annual Computational Neuroscience Meeting: CNS*2010.
Heeyoul Choi, Anup Katake, Seungjin Choi, Yoonseop Kang, and Yoonsuck Choe. Probabilistic combination of multiple evidence. In Proceedings of the International Conference on Neural Information Processing (Part I, Lecture Notes in Computer Science 5863), pages 302-311, 2009.
Daniel Chern-Yeow Eng and Yoonsuck Choe. Stereo pseudo 3D rendering for web-based display of scientific volumetric data. In Proceedings of the IEEE/EG International Symposium on Volume Graphics, 2008.
D. Mayerich, J. Kwon, Y. Choe, L. Abbott, and J. Keyser. Constructing high-resolution microvascular models. In Proceedings of the 3rd International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB 2008), 2008. Online.
Hao Xiong and Yoonsuck Choe. Dynamic pathway analysis. BMC Systems Biology, 2:9, 2008. 17 pages (online open-access journal).
Yoonsuck Choe and Huei-Fang Yang. Decoding spikes without stimulus information: Its implications on receptive-field learning. In Proceedings of the 5th Computational and Systems Neuroscience Meeting (COSYNE 2008 Abstracts), page 267, 2008.
2008 (student thesis/dissertation)
Daniel C.-Y. Eng. Web-based stereo rendering for visualization and annotation of scientific volumetric data. Master's thesis, Department of Computer Science, Texas A&M University, 2008.
Hao Xiong and Yoonsuck Choe. Constrained estimation of genetic networks. In BIOCOMP'07, Proceedings of the 2007 International Conference on Bioinformatics and Computational Biology, pages 51-57, 2007.
Y. Choe, L. C. Abbott, J. Keyser, J. Kwon, D. M. Mayerich, Zeki Melek, and B. H. McCormick. Enhanced microvascular staining and tracing in large volumes of mouse brain tissue. In Neuroscience Meeting Planner, San Diego, CA: Society for Neuroscience, 2007. Program No. 845.14. Online.
D. M. Mayerich, L. C. Abbott, Y. Choe, D. Han, J. Keyser, Zeki Melek, and B. H. McCormick. Efficient methods for tracing and visualization of neural morphology in microscopy image stacks. In Neuroscience Meeting Planner, San Diego, CA: Society for Neuroscience, 2007. Program No. 845.2. Online.
Hao Xiong and Yoonsuck Choe. Significantly different dynamic behaviors of biological networks between normal and abnormal cells in response to perturbation of environmental stressors and drugs. In Engineering Principles in Biological Systems (Cold Spring Harbor Laboratory, New York, December 3-6, 2006), page 52, 2006.
Yoonsuck Choe and Huei-Fang Yang. Co-development of visual receptive fields and their motor primitive-based decoding scheme. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2006. Program No. 734.6. Online.
B. H. McCormick, L. C. Abbott, D. M. Mayerich, , J. Keyser, Jaerock Kwon, Zeki Melek, and Y. Choe. Full-scale submicron neuroanatomy of the mouse brain. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2006. Program No. 694.5. Online.
B. H. McCormick, B. L. Busse, D. M. Mayerich, L. C. Abbott, Y. Choe, J. Keyser, S. J. Smith, and W. Denk. Biologically accurate modeling of mouse brain requires biologically accurate networks. Microscopy and Microanalysis, 11 (Supplement 2):66-67, 2005.
B. H. McCormick, D. M. Mayerich, B. L. Busse, Z. Melek, W. Koh, L. C. Abbott, Y. Choe, and E.-J. Kim. The whole mouse brain: The spatial distribution and morphology of its neurons. Microscopy and Microanalysis, 11 (Supplement 2):640-641, 2005.
J. A. Bednar, Y. Choe, J. De Paula, R. Miikkulainen, and J. Provost. Modeling the visual cortex using the topographica cortical map simulator. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2005. Program No. 508.1.
Yoonsuck Choe and Yingwei Yu. Propagation of the results of cortical computation through the thalamocortical loop: Involvement of corticothalamic feedback and the thalamic reticular nucleus. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2005. Program No. 274.11. Online.
Heejin Lim and Yoonsuck Choe. Extrapolative role of facilitating synapses in the compensation of neural delay. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2005. Program No. 41.19. Online.
Yingwei Yu and Yoonsuck Choe. Asymptotic stability analysis of the thalamocortical circuit. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2005. Program No. 274.23. Online.
James A. Bednar, Yoonsuck Choe, Judah De Paula, Risto Miikkulainen, Jefferson Provost, and Tal Tversky. Modeling cortical maps with Topographica. Neurocomputing, 58-60:1129-1135, 2004.
Yingwei Yu, Takashi Yamauchi, and Yoonsuck Choe. Explaining low-level brightness-contrast illusions using disinhibition. In A. J. Ijspeert, M. Murata, and N. Wakamiya, editors, Biologically Inspired Approaches to Advanced Information Technology, Lecture Notes in Computer Science 3141, pages 166-175, Berlin, 2004. Springer.
2004 (abstracts)
Yoonsuck Choe, Bruce H. McCormcik, and Wonryull Koh. Network connectivity analysis on the temporally augmented em c. elegans web: A pilot study. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2004. Program No. 921.9. Online.
Risto Miikkulainen, James A. Bednar, and Yoonsuck Choe. Sparse, redundancy-reduced visual coding through self-organized lateral connections. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2004. Program No. 490.3. Online.
Yingwei Yu and Yoonsuck Choe. Explaining the scintillating grid illusion using disinhibition and self-inhibition in the early visual pathway. In Society for Neuroscience Abstracts. Washington, DC: Society for Neuroscience, 2004. Program No. 301.10. Online.
Risto Miikkulainen, James A. Bednar, Yoonsuck Choe, and Joseph Sirosh. Modeling self-organization in the visual cortex. In Erkki Oja and Samuel Kaski, editors, Kohonen Maps, New York, 1999. Elsevier.
Risto Miikkulainen, James A. Bednar, Yoonsuck Choe, and Joseph Sirosh. A self-organizing neural network model of the primary visual cortex. In Shiro Usui and Takashi Omori, editors, Proceedings of the Fifth International Conference on Neural Information Processing, volume 2, pages 815-818. Tokyo; Burke, VA; Amsterdam: IOS Press, 1998.
1997
Yoonsuck Choe and Risto Miikkulainen. Self-organization and segmentation with laterally connected maps of spiking neurons. In Workshop on Self-Organizing Maps, pages 20-31, Espoo, Finland, 1997. Helsinki University of Technology.
Joseph Sirosh, Risto Miikkulainen, and Yoonsuck Choe, editors. Lateral Interactions in the Cortex: Structure and Function. The UTCS Neural Networks Research Group, Austin, TX, 1996. Electronic book, ISBN 0-9647060-0-8, http://nn.cs.utexas.edu/web-pubs/htmlbook96/.